format 58
"BlastX" // src::SensorPlugins::BlastX
  revision 3
  modified_by 2 "sallet"
  // class settings
  //class diagram settings
  draw_all_relations default hide_attributes default hide_operations default show_members_full_definition default show_members_visibility default show_members_stereotype default show_members_multiplicity default show_members_initialization default member_max_width 0 show_parameter_dir default show_parameter_name default package_name_in_tab default class_drawing_mode default drawing_language default show_context_mode default auto_label_position default show_infonote default shadow default show_stereotype_properties default
  //use case diagram settings
  package_name_in_tab default show_context default auto_label_position default draw_all_relations default class_drawing_mode default shadow default show_stereotype_properties default
  //sequence diagram settings
  show_full_operations_definition default write_horizontally default class_drawing_mode default drawing_language default draw_all_relations default shadow default show_stereotype_properties default
  //collaboration diagram settings
  show_full_operations_definition default show_hierarchical_rank default write_horizontally default drawing_language default package_name_in_tab default show_context default draw_all_relations default shadow default show_stereotype_properties default
  //object diagram settings
   write_horizontally default package_name_in_tab default show_context default auto_label_position default draw_all_relations default shadow default show_stereotype_properties default
  //component diagram settings
  package_name_in_tab default show_context default auto_label_position default draw_all_relations default shadow default
  draw_component_as_icon default show_component_req_prov default show_component_rea default show_stereotype_properties default
  //deployment diagram settings
  package_name_in_tab default show_context default write_horizontally default auto_label_position default draw_all_relations default shadow default
  draw_component_as_icon default show_component_req_prov default show_component_rea default show_stereotype_properties default
  //state diagram settings
  package_name_in_tab default show_context default auto_label_position default write_trans_label_horizontally default show_trans_definition default draw_all_relations default shadow default
  show_activities default region_horizontally default drawing_language default show_stereotype_properties default
  //activity diagram settings
  package_name_in_tab default show_context default show_opaque_action_definition default auto_label_position default write_flow_label_horizontally default draw_all_relations default shadow default
  show_infonote default drawing_language default show_stereotype_properties default
  
  classview 128642 "BlastX"
    //class diagram settings
    draw_all_relations default hide_attributes default hide_operations default show_members_full_definition default show_members_visibility default show_members_stereotype default show_members_multiplicity default show_members_initialization default member_max_width 0 show_parameter_dir default show_parameter_name default package_name_in_tab default class_drawing_mode default drawing_language default show_context_mode default auto_label_position default show_infonote default shadow default show_stereotype_properties default
    //collaboration diagram settings
    show_full_operations_definition default show_hierarchical_rank default write_horizontally default drawing_language default package_name_in_tab default show_context default draw_all_relations default shadow default show_stereotype_properties default
    //object diagram settings
     write_horizontally default package_name_in_tab default show_context default auto_label_position default draw_all_relations default shadow default show_stereotype_properties default
    //sequence diagram settings
    show_full_operations_definition default write_horizontally default class_drawing_mode default drawing_language default draw_all_relations default shadow default show_stereotype_properties default
    //state diagram settings
    package_name_in_tab default show_context default auto_label_position default write_trans_label_horizontally default show_trans_definition default draw_all_relations default shadow default
    show_activities default region_horizontally default drawing_language default show_stereotype_properties default
    //class settings
    //activity diagram settings
    package_name_in_tab default show_context default show_opaque_action_definition default auto_label_position default write_flow_label_horizontally default draw_all_relations default shadow default
    show_infonote default drawing_language default show_stereotype_properties default
    class 136962 "SensorBlastX"
      visibility package 
      cpp_decl "${comment}${template}class ${name}${inherit} {
${members}};
${inlines}
"
      java_decl ""
      php_decl ""
      python_2_2 python_decl ""
      idl_decl ""
      explicit_switch_type ""
      
      comment "************************************************************
 **                     SensorBlastX                        **
 ************************************************************"
      classrelation 136578 // <generalisation>
	relation 136578 ---|>
	  a public
	    cpp default "${type}"
	    classrelation_ref 136578 // <generalisation>
	  b parent class_ref 130050 // Sensor
      end

      attribute 175618 "ProtMatchPhase"
	private explicit_type "int"
	cpp_decl "    ${comment}${static}${mutable}${volatile}${const}${type} * ${name}${value};
"
	java_decl ""
	php_decl ""
	python_decl ""
	idl_decl ""
      end

      attribute 175746 "vPMatch"
	private explicit_type "float"
	stereotype "std::vector"
	cpp_decl "    ${comment}${static}${mutable}${volatile}${const}${stereotype}<${type}> ${name}${value};
"
	java_decl ""
	php_decl ""
	python_decl ""
	idl_decl ""
      end

      attribute 175874 "iter"
	private explicit_type "std::vector<int>::iterator"
	cpp_decl "    ${comment}${static}${mutable}${volatile}${const}${type} ${name}${value};
"
	java_decl ""
	php_decl ""
	python_decl ""
	idl_decl ""
      end

      attribute 176002 "levels"
	private explicit_type "char"
	cpp_decl "    ${comment}${static}${mutable}${volatile}${const}${type} * ${name}${value};
"
	java_decl ""
	php_decl ""
	python_decl ""
	idl_decl ""
      end

      attribute 176130 "intronlevels"
	private explicit_type "char"
	cpp_decl "    ${comment}${static}${mutable}${volatile}${const}${type} * ${name}${value};
"
	java_decl ""
	php_decl ""
	python_decl ""
	idl_decl ""
      end

      attribute 176258 "index"
	private explicit_type "int"
	cpp_decl "    ${comment}${static}${mutable}${volatile}${const}${type} ${name}${value};
"
	java_decl ""
	php_decl ""
	python_decl ""
	idl_decl ""
      end

      attribute 176386 "keyBXLevel"
	private explicit_type "float"
	multiplicity "[10]"
	cpp_decl "    ${comment}${static}${mutable}${volatile}${const}${type} ${name}${multiplicity}${value};
"
	java_decl ""
	php_decl ""
	python_decl ""
	idl_decl ""
      end

      attribute 176514 "minIn"
	private explicit_type "int"
	cpp_decl "    ${comment}${static}${mutable}${volatile}${const}${type} ${name}${value};
"
	java_decl ""
	php_decl ""
	python_decl ""
	idl_decl ""
      end

      attribute 176642 "blastxM"
	private explicit_type "int"
	cpp_decl "    ${comment}${static}${mutable}${volatile}${const}${type} ${name}${value};
"
	java_decl ""
	php_decl ""
	python_decl ""
	idl_decl ""
      end

      attribute 176770 "ppNumber"
	private explicit_type "int"
	cpp_decl "    ${comment}${static}${mutable}${volatile}${const}${type} ${name}${value};
"
	java_decl ""
	php_decl ""
	python_decl ""
	idl_decl ""
      end

      attribute 176898 "stepid"
	private explicit_type "int"
	cpp_decl "    ${comment}${static}${mutable}${volatile}${const}${type} ${name}${value};
"
	java_decl ""
	php_decl ""
	python_decl ""
	idl_decl ""
      end

      attribute 177026 "N"
	private explicit_type "int"
	cpp_decl "    ${comment}${static}${mutable}${volatile}${const}${type} ${name}${value};
"
	java_decl ""
	php_decl ""
	python_decl ""
	idl_decl ""
      end

      attribute 177154 "sloppy"
	private explicit_type "int"
	cpp_decl "    ${comment}${static}${mutable}${volatile}${const}${type} ${name}${value};
"
	java_decl ""
	php_decl ""
	python_decl ""
	idl_decl ""
      end

      operation 193026 "LoadContentScore"
	private explicit_return_type "void"
	nparams 1
	  param inout name "" type class_ref 128514 // DNASeq
	cpp_decl "    ${comment}${friend}${static}${inline}${virtual}${type} ${name}${(}${t0} * ${p0}${v0}${)}${const}${volatile}${throw}${abstract};
"
	cpp_def "${comment}${inline}${type} ${class}::${name}${(}${t0} * ${p0}${)}${const}${volatile}${throw}${staticnl}{
  ${body}}
"
	
	
	
	
      end

      operation 193154 "ph06"
	private explicit_return_type "char"
	nparams 1
	  param in name "" explicit_type "char"
	cpp_decl "    ${comment}${friend}${static}${inline}${virtual}${type} ${name}${(}${t0} ${p0}${v0}${)}${const}${volatile}${throw}${abstract};
"
	cpp_def "${comment}${inline}${type} ${class}::${name}${(}${t0} ${p0}${)}${const}${volatile}${throw}${staticnl}{
  ${body}}
"
	
	
	
	
      end

      attribute 177410 "NumProt"
	private explicit_type "int"
	cpp_decl "    ${comment}${static}${mutable}${volatile}${const}${type} ${name}${value};
"
	java_decl ""
	php_decl ""
	python_decl ""
	idl_decl ""
      end

      operation 193282 "ProtSupport"
	private explicit_return_type "void"
	nparams 7
	  param inout name "" type class_ref 128386 // Prediction
	  param inout name "" explicit_type "FILE"
	  param in name "debut" explicit_type "int"
	  param in name "fin" explicit_type "int"
	  param inout name "HitTable" type class_ref 128642 // Hits
	  param in name "Size" explicit_type "int"
	  param in name "NumG" explicit_type "int"
	cpp_decl "    ${comment}${friend}${static}${inline}${virtual}${type} ${name}${(}${t0} * ${p0}${v0}, ${t1} * ${p1}${v1}, ${t2} ${p2}${v2}, ${t3} ${p3}${v3}, ${t4} * * ${p4}${v4}, ${t5} ${p5}${v5}, ${t6} ${p6}${v6}${)}${const}${volatile}${throw}${abstract};
"
	cpp_def "${comment}${inline}${type} ${class}::${name}${(}${t0} * ${p0}, ${t1} * ${p1}, ${t2} ${p2}, ${t3} ${p3}, ${t4} * * ${p4}, ${t5} ${p5}, ${t6} ${p6}${)}${const}${throw}${staticnl}{
  ${body}}
"
	
	
	
	
      end

      operation 193410 "LenSup"
	private explicit_return_type "int"
	nparams 8
	  param inout name "HitTable" type class_ref 128642 // Hits
	  param in name "state" explicit_type "int"
	  param inout name "Sup" explicit_type "byte"
	  param in name "vSupProtI" explicit_type "std::vector<int>"
	  param inout name "additionalsup" explicit_type "int"
	  param in name "index" explicit_type "int"
	  param in name "beg" explicit_type "int"
	  param in name "end" explicit_type "int"
	cpp_decl "    ${comment}${friend}${static}${inline}${virtual}${type} ${name}${(}${t0} * * ${p0}${v0}, ${t1} ${p1}${v1}, ${t2} * ${p2}${v2}, ${t3} ${p3}${v3}, ${t4} & ${p4}${v4}, ${t5} ${p5}${v5}, ${t6} ${p6}${v6}, ${t7} ${p7}${v7}${)}${const}${volatile}${throw}${abstract};
"
	cpp_def "${comment}${inline}${type} ${class}::${name}${(}${t0} * * ${p0}, ${t1} ${p1}, ${t2} * ${p2}, ${t3} ${p3}, ${t4} & ${p4}, ${t5} ${p5}, ${t6} ${p6}, ${t7} ${p7}${)}${const}${throw}${staticnl}{
  ${body}}
"
	
	
	
	
      end

      operation 193538 "Print"
	private explicit_return_type "void"
	nparams 1
	  param in name "name" explicit_type "char"
	cpp_decl "    ${comment}${friend}${static}${inline}${virtual}${type} ${name}${(}${t0} ${p0}[FILENAME_MAX+1]${v0}${)}${const}${volatile}${throw}${abstract};
"
	cpp_def "${comment}${inline}${type} ${class}::${name}${(}${t0} ${p0}[FILENAME_MAX+1]${)}${const}${volatile}${throw}${staticnl}{
  ${body}}
"
	
	
	
	
      end

      operation 193666 "SensorBlastX"
	public explicit_return_type ""
	nparams 2
	  param in name "n" explicit_type "int"
	  param inout name "X" type class_ref 128514 // DNASeq
	cpp_decl "    ${comment}${inline}${name}${(}${t0} ${p0}${v0}, ${t1} * ${p1}${v1}${)}${volatile}${throw};
"
	cpp_def "${comment}${inline}${class}::${name}${(}${t0} ${p0}, ${t1} * ${p1}${)}${throw}{
${body}}
"
	
	
	
	
      end

      operation 193794 "~SensorBlastX"
	cpp_virtual public explicit_return_type ""
	nparams 0
	cpp_decl "    ${comment}${inline}${virtual}${name}${(}${)}${volatile}${throw};
"
	cpp_def "${comment}${inline}${class}::${name}${(}${)}${throw}{
${body}}
"
	
	
	
	
      end

      operation 193922 "Init"
	cpp_virtual public explicit_return_type "void"
	nparams 1
	  param inout name "" type class_ref 128514 // DNASeq
	cpp_decl "    ${comment}${friend}${static}${inline}${virtual}${type} ${name}${(}${t0} * ${p0}${v0}${)}${const}${volatile}${throw}${abstract};
"
	cpp_def "${comment}${inline}${type} ${class}::${name}${(}${t0} * ${p0}${)}${const}${volatile}${throw}${staticnl}{
  ${body}}
"
	
	
	
	
      end

      operation 194050 "GiveInfo"
	cpp_virtual public explicit_return_type "void"
	nparams 3
	  param inout name "" type class_ref 128514 // DNASeq
	  param in name "" explicit_type "int"
	  param inout name "" type class_ref 128258 // DATA
	cpp_decl "    ${comment}${friend}${static}${inline}${virtual}${type} ${name}${(}${t0} * ${p0}${v0}, ${t1} ${p1}${v1}, ${t2} * ${p2}${v2}${)}${const}${volatile}${throw}${abstract};
"
	cpp_def "${comment}${inline}${type} ${class}::${name}${(}${t0} * ${p0}, ${t1} ${p1}, ${t2} * ${p2}${)}${const}${throw}${staticnl}{
  ${body}}
"
	
	
	
	
      end

      operation 194178 "Plot"
	cpp_virtual public explicit_return_type "void"
	nparams 1
	  param inout name "" type class_ref 128514 // DNASeq
	cpp_decl "    ${comment}${friend}${static}${inline}${virtual}${type} ${name}${(}${t0} * ${p0}${v0}${)}${const}${volatile}${throw}${abstract};
"
	cpp_def "${comment}${inline}${type} ${class}::${name}${(}${t0} * ${p0}${)}${const}${volatile}${throw}${staticnl}{
  ${body}}
"
	
	
	
	
      end

      operation 194306 "PostAnalyse"
	cpp_virtual public explicit_return_type "void"
	nparams 2
	  param inout name "" type class_ref 128386 // Prediction
	  param inout name "" explicit_type "FILE"
	cpp_decl "    ${comment}${friend}${static}${inline}${virtual}${type} ${name}${(}${t0} * ${p0}${v0}, ${t1} * ${p1}${v1}${)}${const}${volatile}${throw}${abstract};
"
	cpp_def "${comment}${inline}${type} ${class}::${name}${(}${t0} * ${p0}, ${t1} * ${p1}${)}${const}${volatile}${throw}${staticnl}{
  ${body}}
"
	
	
	
	
      end

      classrelation 144130 // HitTable (<unidirectional association>)
	relation 144130 --->
	  a role_name "HitTable" multiplicity "*" protected
	    cpp default "    ${comment}${static}${mutable}${volatile}${const}${type} * ${name}${value};
"
	    classrelation_ref 144130 // HitTable (<unidirectional association>)
	  b parent class_ref 128642 // Hits
      end

      classrelation 146050 // <association>
	relation 145666 ----
	  a role_name "" protected
	    cpp default "    ${comment}${static}${mutable}${volatile}${const}${type} * ${name}${value};
"
	    classrelation_ref 146050 // <association>
	  b role_name "" protected
	    cpp default "    ${comment}${static}${mutable}${volatile}${const}${type} * ${name}${value};
"
	    classrelation_ref 146178 // <association>
      end
    end
  end

  deploymentview 128642 "BlastX"
    //deployment diagram settings
    package_name_in_tab default show_context default write_horizontally default auto_label_position default draw_all_relations default shadow default
    draw_component_as_icon default show_component_req_prov default show_component_rea default show_stereotype_properties default
    artifact 132994 "Sensor.BlastX"
      stereotype "source"
      cpp_h "#ifndef ${NAMESPACE}_${NAME}_H
#define ${NAMESPACE}_${NAME}_H

${comment}
${includes}
${declarations}
${namespace_start}
${definition}
${namespace_end}
#endif
"
      cpp_src "${comment}
${includes}
${namespace_start}
${members}
${namespace_end}"
      associated_classes
	class_ref 136962 // SensorBlastX
      end
    end
  end
end
