format 58
"AnnotaStruct" // src::SensorPlugins::AnnotaStruct
  revision 1
  modified_by 2 "sallet"
  // class settings
  //class diagram settings
  draw_all_relations default hide_attributes default hide_operations default show_members_full_definition default show_members_visibility default show_members_stereotype default show_members_multiplicity default show_members_initialization default member_max_width 0 show_parameter_dir default show_parameter_name default package_name_in_tab default class_drawing_mode default drawing_language default show_context_mode default auto_label_position default show_infonote default shadow default show_stereotype_properties default
  //use case diagram settings
  package_name_in_tab default show_context default auto_label_position default draw_all_relations default class_drawing_mode default shadow default show_stereotype_properties default
  //sequence diagram settings
  show_full_operations_definition default write_horizontally default class_drawing_mode default drawing_language default draw_all_relations default shadow default show_stereotype_properties default
  //collaboration diagram settings
  show_full_operations_definition default show_hierarchical_rank default write_horizontally default drawing_language default package_name_in_tab default show_context default draw_all_relations default shadow default show_stereotype_properties default
  //object diagram settings
   write_horizontally default package_name_in_tab default show_context default auto_label_position default draw_all_relations default shadow default show_stereotype_properties default
  //component diagram settings
  package_name_in_tab default show_context default auto_label_position default draw_all_relations default shadow default
  draw_component_as_icon default show_component_req_prov default show_component_rea default show_stereotype_properties default
  //deployment diagram settings
  package_name_in_tab default show_context default write_horizontally default auto_label_position default draw_all_relations default shadow default
  draw_component_as_icon default show_component_req_prov default show_component_rea default show_stereotype_properties default
  //state diagram settings
  package_name_in_tab default show_context default auto_label_position default write_trans_label_horizontally default show_trans_definition default draw_all_relations default shadow default
  show_activities default region_horizontally default drawing_language default show_stereotype_properties default
  //activity diagram settings
  package_name_in_tab default show_context default show_opaque_action_definition default auto_label_position default write_flow_label_horizontally default draw_all_relations default shadow default
  show_infonote default drawing_language default show_stereotype_properties default
  
  classview 128386 "AnnotaStruct"
    //class diagram settings
    draw_all_relations default hide_attributes default hide_operations default show_members_full_definition default show_members_visibility default show_members_stereotype default show_members_multiplicity default show_members_initialization default member_max_width 0 show_parameter_dir default show_parameter_name default package_name_in_tab default class_drawing_mode default drawing_language default show_context_mode default auto_label_position default show_infonote default shadow default show_stereotype_properties default
    //collaboration diagram settings
    show_full_operations_definition default show_hierarchical_rank default write_horizontally default drawing_language default package_name_in_tab default show_context default draw_all_relations default shadow default show_stereotype_properties default
    //object diagram settings
     write_horizontally default package_name_in_tab default show_context default auto_label_position default draw_all_relations default shadow default show_stereotype_properties default
    //sequence diagram settings
    show_full_operations_definition default write_horizontally default class_drawing_mode default drawing_language default draw_all_relations default shadow default show_stereotype_properties default
    //state diagram settings
    package_name_in_tab default show_context default auto_label_position default write_trans_label_horizontally default show_trans_definition default draw_all_relations default shadow default
    show_activities default region_horizontally default drawing_language default show_stereotype_properties default
    //class settings
    //activity diagram settings
    package_name_in_tab default show_context default show_opaque_action_definition default auto_label_position default write_flow_label_horizontally default draw_all_relations default shadow default
    show_infonote default drawing_language default show_stereotype_properties default
    class 136450 "Signals"
      visibility package 
      cpp_decl "${comment}${template}class ${name}${inherit} {
${members}};
${inlines}
"
      java_decl ""
      php_decl ""
      python_2_2 python_decl ""
      idl_decl ""
      explicit_switch_type ""
      
      comment "************************************************************
 **                       Signals Object                    **
 ************************************************************"
      attribute 174210 "pos"
	public explicit_type "int"
	cpp_decl "    ${comment}${static}${mutable}${volatile}${const}${type} ${name}${value};
"
	java_decl ""
	php_decl ""
	python_decl ""
	idl_decl ""
      end

      attribute 174338 "type"
	public explicit_type "int"
	cpp_decl "    ${comment}${static}${mutable}${volatile}${const}${type} ${name}${value};
"
	java_decl ""
	php_decl ""
	python_decl ""
	idl_decl ""
      end

      attribute 174466 "edge"
	public explicit_type "int"
	cpp_decl "    ${comment}${static}${mutable}${volatile}${const}${type} ${name}${value};
"
	java_decl ""
	php_decl ""
	python_decl ""
	idl_decl ""
      end

      attribute 174594 "score"
	public explicit_type "char"
	multiplicity "[20]"
	cpp_decl "    ${comment}${static}${mutable}${volatile}${const}${type} ${name}${multiplicity}${value};
"
	java_decl ""
	php_decl ""
	python_decl ""
	idl_decl ""
      end

      operation 189442 "Signals"
	public explicit_return_type ""
	nparams 0
	cpp_decl "    ${comment}${inline}${name}${(}${)}${volatile}${throw};
"
	cpp_def "${comment}${inline}${class}::${name}${(}${)}${throw}{
${body}}
"
	
	
	
	
      end

      operation 189570 "Signals"
	public explicit_return_type ""
	nparams 4
	  param in name "" explicit_type "int"
	  param in name "" explicit_type "int"
	  param in name "" explicit_type "int"
	  param in name "" explicit_type "char"
	cpp_decl "    ${comment}${inline}${name}${(}${t0} ${p0}${v0}, ${t1} ${p1}${v1}, ${t2} ${p2}${v2}, ${t3} ${p3}[20]${v3}${)}${volatile}${throw};
"
	cpp_def "${comment}${inline}${class}::${name}${(}${t0} ${p0}, ${t1} ${p1}, ${t2} ${p2}, ${t3} ${p3}[20]${)}${throw}{
${body}}
"
	
	
	
	
      end

      operation 189698 "~Signals"
	public explicit_return_type ""
	nparams 0
	cpp_decl "    ${comment}${inline}${virtual}${name}${(}${)}${volatile}${throw};
"
	cpp_def "${comment}${inline}${class}::${name}${(}${)}${throw}{
${body}}
"
	
	
	
	
      end

      operation 189826 "PrintS"
	public explicit_return_type "void"
	nparams 0
	cpp_decl "    ${comment}${friend}${static}${inline}${virtual}${type} ${name}${(}${)}${const}${volatile}${throw}${abstract};
"
	cpp_def "${comment}${inline}${type} ${class}::${name}${(}${)}${const}${volatile}${throw}${staticnl}{
  ${body}}
"
	
	
	
	
      end

      operation 189954 "operator <"
	cpp_inline public explicit_return_type "bool"
	nparams 1
	  param in name "i" explicit_type "int"
	cpp_decl "    ${comment}${friend}${static}${inline}${virtual}${type} ${name}${(}${t0} ${p0}${v0}${)}${const}${volatile}${throw}${abstract} { if (pos < i) return true; else return false; };
"
	
	
	
	
      end
    end

    class 136578 "Contents"
      visibility package 
      cpp_decl "${comment}${template}class ${name}${inherit} {
${members}};
${inlines}
"
      java_decl ""
      php_decl ""
      python_2_2 python_decl ""
      idl_decl ""
      explicit_switch_type ""
      
      comment "************************************************************
 **                      Contents Object                    **
 ************************************************************"
      attribute 174722 "start"
	public explicit_type "int"
	cpp_decl "    ${comment}${static}${mutable}${volatile}${const}${type} ${name}${value};
"
	java_decl ""
	php_decl ""
	python_decl ""
	idl_decl ""
      end

      attribute 174850 "end"
	public explicit_type "int"
	cpp_decl "    ${comment}${static}${mutable}${volatile}${const}${type} ${name}${value};
"
	java_decl ""
	php_decl ""
	python_decl ""
	idl_decl ""
      end

      attribute 174978 "type"
	public explicit_type "int"
	cpp_decl "    ${comment}${static}${mutable}${volatile}${const}${type} ${name}${value};
"
	java_decl ""
	php_decl ""
	python_decl ""
	idl_decl ""
      end

      attribute 175106 "score"
	public explicit_type "float"
	cpp_decl "    ${comment}${static}${mutable}${volatile}${const}${type} ${name}${value};
"
	java_decl ""
	php_decl ""
	python_decl ""
	idl_decl ""
      end

      operation 190082 "Contents"
	public explicit_return_type ""
	nparams 0
	cpp_decl "    ${comment}${inline}${name}${(}${)}${volatile}${throw};
"
	cpp_def "${comment}${inline}${class}::${name}${(}${)}${throw}{
${body}}
"
	
	
	
	
      end

      operation 190210 "Contents"
	public explicit_return_type ""
	nparams 4
	  param in name "" explicit_type "int"
	  param in name "" explicit_type "int"
	  param in name "" explicit_type "int"
	  param in name "" explicit_type "float"
	cpp_decl "    ${comment}${inline}${name}${(}${t0} ${p0}${v0}, ${t1} ${p1}${v1}, ${t2} ${p2}${v2}, ${t3} ${p3}${v3}${)}${volatile}${throw};
"
	cpp_def "${comment}${inline}${class}::${name}${(}${t0} ${p0}, ${t1} ${p1}, ${t2} ${p2}, ${t3} ${p3}${)}${throw}{
${body}}
"
	
	
	
	
      end

      operation 190338 "~Contents"
	public explicit_return_type ""
	nparams 0
	cpp_decl "    ${comment}${inline}${virtual}${name}${(}${)}${volatile}${throw};
"
	cpp_def "${comment}${inline}${class}::${name}${(}${)}${throw}{
${body}}
"
	
	
	
	
      end

      operation 190466 "PrintC"
	public explicit_return_type "void"
	nparams 0
	cpp_decl "    ${comment}${friend}${static}${inline}${virtual}${type} ${name}${(}${)}${const}${volatile}${throw}${abstract};
"
	cpp_def "${comment}${inline}${type} ${class}::${name}${(}${)}${const}${volatile}${throw}${staticnl}{
  ${body}}
"
	
	
	
	
      end
    end

    class 136706 "SensorAnnotaStruct"
      visibility package 
      cpp_decl "${comment}${template}class ${name}${inherit} {
${members}};
${inlines}
"
      java_decl ""
      php_decl ""
      python_2_2 python_decl ""
      idl_decl ""
      explicit_switch_type ""
      
      comment "************************************************************
 **                      SensorAnnotaStruct
 ************************************************************"
      classrelation 136066 // <generalisation>
	relation 136066 ---|>
	  a public
	    cpp default "${type}"
	    classrelation_ref 136066 // <generalisation>
	  b parent class_ref 130050 // Sensor
      end

      classrelation 136194 // vSig (<unidirectional association>)
	relation 136194 --->
	  stereotype "std::vector"
	  a role_name "vSig" private
	    cpp default "    ${comment}${static}${mutable}${volatile}${const}${stereotype}<${type}*> ${name}${value};
"
	    classrelation_ref 136194 // vSig (<unidirectional association>)
	  b parent class_ref 136450 // Signals
      end

      classrelation 136322 // vCon (<unidirectional association>)
	relation 136322 --->
	  stereotype "std::vector"
	  a role_name "vCon" private
	    cpp default "    ${comment}${static}${mutable}${volatile}${const}${stereotype}<${type}*> ${name}${value};
"
	    classrelation_ref 136322 // vCon (<unidirectional association>)
	  b parent class_ref 136578 // Contents
      end

      attribute 175234 "fileExt"
	private explicit_type "char"
	cpp_decl "    ${comment}${static}${mutable}${volatile}${const}${type} * ${name}${value};
"
	java_decl ""
	php_decl ""
	python_decl ""
	idl_decl ""
      end

      attribute 175362 "transFeatName"
	private explicit_type "string"
	cpp_decl "    ${comment}${static}${mutable}${volatile}${const}${type} ${name}${value};
"
	java_decl ""
	php_decl ""
	python_decl ""
	idl_decl ""
      end

      operation 190594 "ReadAnnotaStruct"
	private explicit_return_type "void"
	nparams 2
	  param in name "" explicit_type "char"
	  param in name "seqlen" explicit_type "int"
	cpp_decl "    ${comment}${friend}${static}${inline}${virtual}${type} ${name}${(}${t0} ${p0}[FILENAME_MAX+1]${v0}, ${t1} ${p1}${v1}${)}${const}${volatile}${throw}${abstract};
"
	cpp_def "${comment}${inline}${type} ${class}::${name}${(}${t0} ${p0}[FILENAME_MAX+1], ${t1} ${p1}${)}${const}${volatile}${throw}${staticnl}{
  ${body}}
"
	
	
	
	
      end

      operation 190722 "FillOntologyTerm"
	private explicit_return_type "void"
	nparams 1
	  param inout name "geneFeatureSet" type class_ref 130562 // GeneFeatureSet
	cpp_decl "    ${comment}${friend}${static}${inline}${virtual}${type} ${name}${(}${t0} & ${p0}${v0}${)}${const}${volatile}${throw}${abstract};
"
	cpp_def "${comment}${inline}${type} ${class}::${name}${(}${t0} & ${p0}${)}${const}${volatile}${throw}${staticnl}{
  ${body}}
"
	
	
	
	
      end

      operation 190850 "ReadAnnotaStructGff3"
	private explicit_return_type "void"
	nparams 2
	  param inout name "geneFeatureSet" type class_ref 130562 // GeneFeatureSet
	  param in name "len" explicit_type "int"
	cpp_decl "    ${comment}${friend}${static}${inline}${virtual}${type} ${name}${(}${t0} & ${p0}${v0}, ${t1} ${p1}${v1}${)}${const}${volatile}${throw}${abstract};
"
	cpp_def "${comment}${inline}${type} ${class}::${name}${(}${t0} & ${p0}, ${t1} ${p1}${)}${const}${volatile}${throw}${staticnl}{
  ${body}}
"
	
	
	
	
      end

      operation 190978 "PushInCon"
	private explicit_return_type "void"
	nparams 6
	  param in name "d" explicit_type "int"
	  param in name "e" explicit_type "int"
	  param in name "sc" explicit_type "float"
	  param in name "st" explicit_type "char"
	  param in name "p" explicit_type "char"
	  param in name "f" explicit_type "int"
	cpp_decl "    ${comment}${friend}${static}${inline}${virtual}${type} ${name}${(}${t0} ${p0}${v0}, ${t1} ${p1}${v1}, ${t2} ${p2}${v2}, ${t3} ${p3}${v3}, ${t4} ${p4}[2]${v4}, ${t5} ${p5}${v5}${)}${const}${volatile}${throw}${abstract};
"
	cpp_def "${comment}${inline}${type} ${class}::${name}${(}${t0} ${p0}, ${t1} ${p1}, ${t2} ${p2}, ${t3} ${p3}, ${t4} ${p4}[2], ${t5} ${p5}${)}${const}${throw}${staticnl}{
  ${body}}
"
	
	
	
	
      end

      operation 191106 "GetScore"
	private explicit_return_type "void"
	nparams 3
	  param in name "type" explicit_type "int"
	  param in name "scF" explicit_type "float"
	  param in name "scoreC" explicit_type "char"
	cpp_decl "    ${comment}${friend}${static}${inline}${virtual}${type} ${name}${(}${t0} ${p0}${v0}, ${t1} ${p1}${v1}, ${t2} ${p2}[20]${v2}${)}${const}${volatile}${throw}${abstract};
"
	cpp_def "${comment}${inline}${type} ${class}::${name}${(}${t0} ${p0}, ${t1} ${p1}, ${t2} ${p2}[20]${)}${const}${throw}${staticnl}{
  ${body}}
"
	
	
	
	
      end

      operation 191234 "SensorAnnotaStruct"
	public explicit_return_type ""
	nparams 2
	  param in name "n" explicit_type "int"
	  param inout name "X" type class_ref 128514 // DNASeq
	cpp_decl "    ${comment}${inline}${name}${(}${t0} ${p0}${v0}, ${t1} * ${p1}${v1}${)}${volatile}${throw};
"
	cpp_def "${comment}${inline}${class}::${name}${(}${t0} ${p0}, ${t1} * ${p1}${)}${throw}{
${body}}
"
	
	
	
	
      end

      operation 191362 "~SensorAnnotaStruct"
	cpp_virtual public explicit_return_type ""
	nparams 0
	cpp_decl "    ${comment}${inline}${virtual}${name}${(}${)}${volatile}${throw};
"
	cpp_def "${comment}${inline}${class}::${name}${(}${)}${throw}{
${body}}
"
	
	
	
	
      end

      operation 191490 "Init"
	cpp_virtual public explicit_return_type "void"
	nparams 1
	  param inout name "" type class_ref 128514 // DNASeq
	cpp_decl "    ${comment}${friend}${static}${inline}${virtual}${type} ${name}${(}${t0} * ${p0}${v0}${)}${const}${volatile}${throw}${abstract};
"
	cpp_def "${comment}${inline}${type} ${class}::${name}${(}${t0} * ${p0}${)}${const}${volatile}${throw}${staticnl}{
  ${body}}
"
	
	
	
	
      end

      operation 191618 "GiveInfo"
	cpp_virtual public explicit_return_type "void"
	nparams 3
	  param inout name "X" type class_ref 128514 // DNASeq
	  param in name "" explicit_type "int"
	  param inout name "" type class_ref 128258 // DATA
	cpp_decl "    ${comment}${friend}${static}${inline}${virtual}${type} ${name}${(}${t0} * ${p0}${v0}, ${t1} ${p1}${v1}, ${t2} * ${p2}${v2}${)}${const}${volatile}${throw}${abstract};
"
	cpp_def "${comment}${inline}${type} ${class}::${name}${(}${t0} * ${p0}, ${t1} ${p1}, ${t2} * ${p2}${)}${const}${throw}${staticnl}{
  ${body}}
"
	
	
	
	
      end

      operation 191746 "Plot"
	cpp_virtual public explicit_return_type "void"
	nparams 1
	  param inout name "X" type class_ref 128514 // DNASeq
	cpp_decl "    ${comment}${friend}${static}${inline}${virtual}${type} ${name}${(}${t0} * ${p0}${v0}${)}${const}${volatile}${throw}${abstract};
"
	cpp_def "${comment}${inline}${type} ${class}::${name}${(}${t0} * ${p0}${)}${const}${volatile}${throw}${staticnl}{
  ${body}}
"
	
	
	
	
      end

      operation 191874 "PostAnalyse"
	cpp_virtual public explicit_return_type "void"
	nparams 2
	  param inout name "" type class_ref 128386 // Prediction
	  param inout name "" explicit_type "FILE"
	cpp_decl "    ${comment}${friend}${static}${inline}${virtual}${type} ${name}${(}${t0} * ${p0}${v0}, ${t1} * ${p1}${v1}${)}${const}${volatile}${throw}${abstract};
"
	cpp_def "${comment}${inline}${type} ${class}::${name}${(}${t0} * ${p0}, ${t1} * ${p1}${)}${const}${volatile}${throw}${staticnl}{
  ${body}}
"
	
	
	
	
      end
    end
  end

  deploymentview 128386 "AnnotaStruct"
    //deployment diagram settings
    package_name_in_tab default show_context default write_horizontally default auto_label_position default draw_all_relations default shadow default
    draw_component_as_icon default show_component_req_prov default show_component_rea default show_stereotype_properties default
    artifact 132738 "Sensor.AnnotaStruct"
      stereotype "source"
      cpp_h "#ifndef ${NAMESPACE}_${NAME}_H
#define ${NAMESPACE}_${NAME}_H

${comment}
${includes}
${declarations}
${namespace_start}
${definition}
${namespace_end}
#endif
"
      cpp_src "${comment}
${includes}
${namespace_start}
${members}
${namespace_end}"
      associated_classes
	class_ref 136450 // Signals
	class_ref 136578 // Contents
	class_ref 136706 // SensorAnnotaStruct
      end
    end
  end
end
